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Organizace a zpracování dat II - 2012/2013

Zápočet bude udělen za aktivní účast na civčení.  Účast je povinná a evidována zde.

A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools

Authors: 
J. Novák, T. Sachsenberg, D. Hoksza, T. Skopal, O. Kohlbacher
Indexed by WOS: 
Not indexed by WOS
Indexed by SCOPUS: 
Indexed by SCOPUS
Type: 
Proceedings
State: 
Published
Language: 
EN
Conference/Journal name: 
7th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB)
Publisher: 
Springer
Year: 
2013
Volume: 
Advances in Intelligent and Soft-Computing (AISC), vol. 222
Pages: 
101-109
Location: 
Salamanca, Spain

Analyzing and Dynamically Indexing the Query Set

Authors: 
J. M. Barrios, B. Bustos, T. Skopal
Indexed by WOS: 
Indexed by WOS
Indexed by SCOPUS: 
Indexed by SCOPUS
Type: 
Journal
State: 
Published
Language: 
EN
Conference/Journal name: 
Information Systems
Publisher: 
Elsevier
Year: 
2014
Volume: 
45
Pages: 
37-47
ISSN: 
0306-4379

Top conferences in bioinformatics & computational biology

Research area: 
Bioinformatics & Chemoinformatics

ViFrame

 

ViFrame

Type: 
Bioinformatics & Cheminformatics
One line description: 
Chemical space visualization framework
Annotation: 

 

ViFrame is a modular framework targeted at chemical space visualization task. It offers a simple implementation of every single part of the visualization pipeline consisting of steps such as reading and merging molecules from multiple data sources, applying transformations and finally visualization of the data set in 2D space. The framework also incorporates an application that provides the user with graphical
interface for modules manipulation and presentation of the visualization results. For simple utilization of the application without the necessity of implementation of one’s own module, several visualization methods are implemented and delivered with the project.
Developers: 
david.hoksza
petr.skoda

Security seminar AFCEA on topic BIG data, Police Academy of the Czech Republic, Prague, 2012

Date: 
27.11.2012

RNDr. Jakub Lokoč Ph.D. has presented an invited talk about similarity search problems in huge multimedia collections at the security seminar BIG DATA, organized by the Police Academy of the Czech Republic in Prague, 27.11.2012. More information about the seminar available here (CZ) - stránkách akce.

Jeden den s informatikou 2012 (in czech)

Date: 
19.09.2012

Přednášky:

  • David Hoksza: Bioinformatika a cheminformatika na MFF

PGRTree homepage

Introduction

In commercial database platforms, the standard search over multiple attributes is provided by B+-tree (or it’s variants) with compound keys. On the other hand, such systems provide also multidimensional indexing, however, just for spatial purposes (such as GIS or CAD applications) and use special data types and querying syntax. Our solution allows to apply R-tree index (hence multi-dimensional indexing structure) in the same way as B+-tree with compound keys is applied. The solution is delivered as a plugin for PostgreSQL database.

PGRTree

Type: 
General indexing
One line description: 
Plugin for Indexing Multidimensional Data in PostgreSQL Using R-tree
Annotation: 

In commercial database platforms, the standard search over multiple attributes is provided by B+-tree (or it’s variants) with compound keys. On the other hand, such systems provide also multidimensional indexing, however, just for spatial purposes (such as GIS or CAD applications) and use special data types and querying syntax. Our solution allows to apply R-tree index (hence multi-dimensional indexing structure) in the same way as B+-tree with compound keys is applied. The solution is delivered as a plugin for PostgreSQL database.

Developers: 
david.hoksza
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