Skip to Content

journal paper, indexed by WoS, indexed by Scopus

2013 (2 publications)

  1. J. Novák, T. Sachsenberg, D. Hoksza, T. Skopal, O. Kohlbacher. On Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, Efficiency of Precursor Mass Filter and Dealing with Variable Modifications, Journal of Integrative Bioinformatics, 10(3), 2013

  2. J. Novák, T. Sachsenberg, D. Hoksza, T. Skopal, O. Kohlbacher. A Statistical Comparison of SimTandem with State-of-the-Art Peptide Identification Tools, 7th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB), Salamanca, Spain, Advances in Intelligent and Soft-Computing (AISC), vol. 222, pp.: 101-109, Springer, 2013

2012 (5 publications)

  1. J. Novák, T. Skopal, D. Hoksza, J. Lokoč. Non-metric Similarity Search of Tandem Mass Spectra Including Posttranslational Modifications, Journal of Discrete Algorithms, 13, pp.: 19-31, Elsevier, ISSN: 1570-8667, 2012

  2. J. Novák, D. Hoksza, J. Lokoč, T. Skopal. On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering, ISBRA, Dallas, TX, USA, LNBI 7292, pp.: 189-200, Springer, 2012

  3. J. Novák, J. Galgonek, D. Hoksza, T. Skopal. SimTandem: Similarity Search in Tandem Mass Spectra, SISAP, Toronto, Ontario, Canada, LNCS 7404, pp.: 242-243, Springer, 2012

  4. J. Lokoč, P. Čech, J. Novák, T. Skopal. Cut-region: A Compact Building Block For Hierarchical Metric Indexing, SISAP, Toronto, Ontario, Canada, LNCS 7404, pp.: 85-100, Springer, ISBN: 978-3-642-32152-8, ISSN: 0302-9743, 2012

  5. J. Lokoč, D. Novák, M. Batko, T. Skopal. Visual Image Search: Feature Signatures or/and Global Descriptors, SISAP 2012, Toronto, Canada, LNCS 7404, pp.: 177-191, Springer, ISBN: 978-3-642-32152-8, ISSN: 0302-9743, 2012

2011 (1 publication)

  1. J. Novák, T. Skopal, D. Hoksza, J. Lokoč, J. Galgonek. Protein Sequences Identification using NM-tree, SISAP, Lipari, Italy, pp.: 125-126, ACM, ISBN: 978-1-4503-0795-6, 2011

2010 (3 publications)

  1. J. Novák, D. Hoksza. Similarity Search and Posttranslational Modifications in Tandem Mass Spectra, BIBM, Hong Kong, China, pp.: 845-846, IEEE, ISBN: 978-1-4244-8302-0, 2010

  2. J. Novák, D. Hoksza. Parametrised Hausdorff Distance as a Non-Metric Similarity Model for Tandem Mass Spectrometry, DATESO, Štědronín - Plazy, Czech Republic, pp.: 1-12, CEUR proceedings, ISSN: 1613-0073, 2010

  3. J. Novák, T. Skopal, D. Hoksza, J. Lokoč. Improving the Similarity Search of Tandem Mass Spectra using Metric Access Methods, SISAP, Istanbul, Turkey, pp.: 85-92, ACM, ISBN: 978-1-4503-0420-7, 2010

2009 (1 publication)

  1. J. Novák, D. Hoksza. An Application of the Metric Access Methods to the Mass Spectrometry Data, CIBCB, Nashville, TN, USA, pp.: 220-227, IEEE, ISBN: 978-1-4244-2756-7, 2009