Department of Software Engineering
Faculty of Mathematics and Physics
Charles University in Prague
Phone: (+420) 221 914 227
Fax: (+420) 221 914 323
E-mail: hoksza (at) ksi (dot) mff (dot) cuni (dot) cz
WWW: http://siret.cz/hoksza
Charles University in Prague, Czech Republic
Faculty of Mathematics and Physics, School of Computer Science
- Ph.D., Software Systems, September 2010
- Thesis: Similarity Search in Protein Databases
- Advisor: Tomáš Skopal, PhD.
- RNDr., Software Systems, September 2008
- M.Sc., Data Engineering, August 2006
- Thesis: Multidimensional Indexing in Relational Databases
- Advisor: Tomáš Skopal, PhD.
- databases : indexing, metric indexing, non-metric indexing
- bioinformatics : structural bioinformatics, protein sequence and structure databases, rna sequence and structure databases
- cheminformatics : chemical space exploration, chemical space visualization
Researcher (September 2010 - present)
Department of Software Engineering, School of Computer Science, FMP,
Charles University in Prague
Department of Software Engineering, Faculty of Information Technology,
Department of Computer Science and Mathematics,
Helmholtz Zentrum Munchen, Institute of Bioinformatics and Systems Biology, |
January 2012 – April 2012 |
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Founding member of SIRET Research Group
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Member of CSBMB (Czech Society For Biochemistry and Molecular Biology)
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Member of FOBIA (Czech Free & Open BioInformatic Association)
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Member of CSCH (Czech Chemical Society)
Review:
- ADBIS 2011
- DKE Journal 2009
- SISAP 2008, 2009, 2010, 2012
- DATESO 2008, 2012
- Journal of Molecular Graphics and Modelling
- ENBIK 2012 — National Bioinformatics Conference
- CSPUG seminars 2011, 2012 — co-organizing seminars of the Czech and Slovak PostgreSQL Group
- DATESO 2007
Charles University in Prague, Prague, Czech Republic
Teaching Asistant (September 2006 – present)
- Administration of MS SQL Server
- Database Systems
- Database Applications
Teaching Asistant (September 2011 – present)
- Bioinformatics Algorithms
- Database Systems
Teaching Asistant (September 2009 – September 2011)
- Database Systems
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Retrieval of Multimedia Content on the Web
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Searching Web and Multimedia Databases
- Introduction to Unix
Bernard Bolzano Foundation in Computer science Award
Awarded for the paper Density-Based Classification of Protein Structures Using Iterative TM-score, 2010
Werner Von Siemens Excellence Award
Honorable mention for the PhD thesis Similarity Search in Protein Databases, 2010
Programming Languages:
- C, C++, C#, ASP.NET, Java, JavaScript, PHP, UNIX shell scripting, SQL
- Microsoft SQL Server (TSQL programming, administration), Oracle(PL/SQL programming, administration), PostgreSQL (PG/SQL programming), Firebird (SQL programming), MySQL (SQL programming)