Department of Software Engineering
Faculty of Mathematics and Physics
Charles University in Prague
Phone: (+420) 221 914 227
Fax: (+420) 221 914 323
E-mail: hoksza (at) ksi (dot) mff (dot) cuni (dot) cz
WWW: http://siret.cz/hoksza
Charles University in Prague, Czech Republic
Faculty of Mathematics and Physics, School of Computer Science
- Ph.D., Software Systems, September 2010
- Thesis: Similarity Search in Protein Databases
- Advisor: Tomáš Skopal, PhD.
- RNDr., Software Systems, September 2008
- M.Sc., Data Engineering, August 2006
- Thesis: Multidimensional Indexing in Relational Databases
- Advisor: Tomáš Skopal, PhD.
- databases : indexing, metric indexing, non-metric indexing
- bioinformatics : structural bioinformatics, protein sequence and structure databases, rna sequence and structure databases
- cheminformatics : chemical space exploration, chemical space visualization
Researcher (September 2010 - present)
Department of Software Engineering, School of Computer Science, FMP,
Charles University in Prague
Department of Software Engineering, Faculty of Information Technology,
Department of Computer Science and Mathematics,
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Helmholtz Zentrum Munchen, Institute of Bioinformatics and Systems Biology, |
January 2012 – April 2012 |
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Founding member of SIRET Research Group
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Member of CSBMB (Czech Society For Biochemistry and Molecular Biology)
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Member of FOBIA (Czech Free & Open BioInformatic Association)
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Member of CSCH (Czech Chemical Society)
Review:
- ADBIS 2011
- DKE Journal 2009
- SISAP 2008, 2009, 2010, 2012
- DATESO 2008, 2012
- Journal of Molecular Graphics and Modelling
- ENBIK 2012 — National Bioinformatics Conference
- CSPUG seminars 2011, 2012 — co-organizing seminars of the Czech and Slovak PostgreSQL Group
- DATESO 2007
Charles University in Prague, Prague, Czech Republic
Teaching Asistant (September 2006 – present)
- Administration of MS SQL Server
- Database Systems
- Database Applications
Teaching Asistant (September 2011 – present)
- Bioinformatics Algorithms
- Database Systems
Teaching Asistant (September 2009 – September 2011)
- Database Systems
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Retrieval of Multimedia Content on the Web
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Searching Web and Multimedia Databases
- Introduction to Unix
Bernard Bolzano Foundation in Computer science Award
Awarded for the paper Density-Based Classification of Protein Structures Using Iterative TM-score, 2010
Werner Von Siemens Excellence Award
Honorable mention for the PhD thesis Similarity Search in Protein Databases, 2010
Programming Languages:
- C, C++, C#, ASP.NET, Java, JavaScript, PHP, UNIX shell scripting, SQL
- Microsoft SQL Server (TSQL programming, administration), Oracle(PL/SQL programming, administration), PostgreSQL (PG/SQL programming), Firebird (SQL programming), MySQL (SQL programming)