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DBLP record for Petr Škoda

journal paper, indexed by WoS, indexed by Scopus

2020 (1 publication)

  1. PDBe-KB consortium, David Hoksza, Radoslav Krivák, Petr Škoda. PDBe-KB: a community-driven resource for structural and functional annotations, Nucleic Acids Research, 48(D1), pp.: D344–D353, Oxford Journals, ISSN: 1362-4962, 2020

2019 (2 publications)

  1. Lukáš Jendele, Radoslav Krivák, Petr Škoda, Marian Novotný, David Hoksza. PrankWeb: a web server for ligand binding site prediction and visualization, Nucleic Acids Research, Oxford Journals, ISSN: 1362-4962, 2019

  2. P. Skoda, J. Klimek, M. Necasky, T. Skopal. Explainable Similarity of Datasets using Knowledge Graph, SISAP 2019, Springer, 2019

2018 (1 publication)

  1. Jan Jelínek, Petr Škoda, David Hoksza. Software framework for similarity-based prediction of protein interfaces, BIBM, Madrid, Spain, IEEE, ISBN: 978-1-5386-5488-0, 2018

2017 (2 publications)

  1. Jan Jelínek, Petr Škoda, David Hoksza. Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites, BMC Bioinformatics, 18(Suppl. 15), Springer Nature, ISSN: 1471-2105, 2017

  2. Petr Škoda, David Hoksza. Platform for ligand-based virtual screening, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), IEEE, 2017

2016 (3 publications)

  1. David Hoksza, Petr Škoda. Using Bayesian Modeling on Molecular Fragments Features for Virtual Screening, IEEE International Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2016), Chiang Mai, Thailand, IEEE, ISBN: 978-1-4673-9472-7, 2016

  2. Petr Škoda, David Hoksza. Benchmarking Platform for Ligand-Based Virtual Screening, BIBM Workshop on Health Informatics and Data Science (HI-DS), Shenzhen, China, pp.: 1225-1232, IEEE, ISBN: 978-1-5090-1610-5, 2016

  3. Jan Jelínek, Petr Škoda, David Hoksza. Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites, IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS), Atlanta, GA, USA, IEEE, ISBN: 978-1-5090-4199-2, 2016

2015 (1 publication)

  1. Petr Škoda, David Hoksza. Exploration of Topological Torsion Fingerprints, BIBM Workshop on Health Informatics and Data Science (HI-DS), Washington, USA, IEEE, 2015

2014 (4 publications)

  1. David Hoksza, Petr Škoda, Milan Voršilák and Daniel Svozil. Molpher: a software framework for systematic chemical space exploration, Journal of Cheminformatics, 6(7), Chemistry Central, ISSN: 1758-2946, 2014

  2. Petr Škoda, David Hoksza. Target-Oriented Generic Fingerprint-Based Molecular Representation, CSEIT, Computer Science & Information Technology (CS & IT), ISSN: 2231-5403, 2014

  3. David Hoksza, Petr Škoda. Scaffold-based chemical space exploration, IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp.: 1-3, IEEE, 2014

  4. David Hoksza, Petr Škoda. 2D Pharmacophore Query Generation, ISBRA, Central South University, Zhangjiajie, China, Springer, 2014

2013 (1 publication)

  1. P. Škoda, D. Hoksza. Chemical Space Visualization Using ViFrame, International Conference on Computer and Information Science (ICIS 2013), Toki Messe, Niigata, Japan, pp.: 541 - 546, IEEE, ISBN: 978-147990174-6, 2013